PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS748440.10
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 127aa    MW: 14328.8 Da    PI: 10.6515
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS748440.10genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3376e-1236123190
                   EEEE-..-HHHHT..T-E.E--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
            B3   1 ffkvltpsdvlks..grl.vlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                   f++v  ps+v +s  +r+ ++p kf+++h  k  +s++++   ++++sW  kli   + +++   l +GW  F++a  L+egD+ vF+l++rs +
  EcS748440.10  36 FISVAYPSYVKNStaARFsSVPVKFMRTHI-K--RSMQVMTIKPKNESWPAKLIKfpWDHGK---L-SGWFPFARATSLCEGDVYVFELTKRSPT 123
                   66677788888886644459*******994.3..6789999************665655542...4.6********************9987665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.6E-1328121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.55E-1130121IPR015300DNA-binding pseudobarrel domain
PfamPF023623.0E-837123IPR003340B3 DNA binding domain
PROSITE profilePS508638.85439127IPR003340B3 DNA binding domain
CDDcd100171.89E-755121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
SASRACPAML VARRCNVPCS AALEMARDFK SKHPTFISVA YPSYVKNSTA ARFSSVPVKF  60
MRTHIKRSMQ VMTIKPKNES WPAKLIKFPW DHGKLSGWFP FARATSLCEG DVYVFELTKR  120
SPTVLEV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010027831.13e-52PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X3
RefseqXP_010027832.13e-52PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X3
TrEMBLA0A059ALH83e-75A0A059ALH8_EUCGR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3525322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.12e-08B3 family protein